BioStarM-140s芯片基因信息查询系统的构建及应用

应用生物信息学数据库查询的方法,对B ioS tarM-140s小鼠基因表达芯片上的14 112个基因进行相应注释信息的查询和所对应蛋白质功能的分类.首先参照人类综合型芯片上基因的功能分类,设定了14个蛋白质类别,然后采用V isual C 编程语言,构建了基因信息查询系统.应用该查询系统,进行了网络生物学数据库信息资源的自动直接查询,共搜索到有注释信息的基因12 070个;进一步按照所设定的14个蛋白质类别对12 070个基因进行分类查询,搜索到了与这14个分类相符合的、具有详细蛋白质功能注释信息的基因共1 606个.     

两种不同示踪剂用于蛋白质与抗原分子微阵列信号检测的对比研究

以氧化型琼脂糖凝胶膜为基片，制作蛋白质与抗原分子微阵列，建立了检测固相人IgG,游离IgG和自身抗体分子的免疫学测定模式，分别以辣根过氧化物酶－二氨基联苯胺一双氧水（HRPDAB－H2O2）和胶体金－硝酸银－对苯二酚2种示踪系统作为蛋白质与抗原分子微阵列信号显示剂，并对其作用的原理与特点进行讨论，检测结果发现基于胶体金的免疫金银染色法（IGSS）比固相酶免疫测定法（EIA）敏感，2种示踪系统对固相人IgG的最低检出量分别为0．05ng和0．5ng；而对血清游离IgG的最低检出量IGSS法比EIA法至少高出10倍，两法用于自身抗体的测定亦表现出较好的重复性，在14例HCV感染者中，自身抗体的总体检出率分别为38．6％和31．4％，结果具有显著的同步性，故同时辅以2种示踪剂并用于阵列芯片的联合测试，有助于提高自身抗体的总体检出水平。     

Design and application of 60mer oligonucleotide microarray in SARS coronavirus detection

In April 2003, a novel coronavirus[1,2] which was associated with cases of Severe Acute Respiratory Syn-drome (SARS) was first isolated and sequenced in Canada. The genome of SARS coronavirus (SARS-CoV) is 29727[3] nucleotides in length and has 11 known open reading frames (ORFs). Although the genome organiza-tion of this virus is similar to that of other coronaviruses, phylogenetic analyses and sequence alignment show that SARS-CoV is not closely related to any of the previously ch…     

基于连接酶检测反应的并行分型系统检测AGT M235T和ACE I/D基因多态性

基因多态性蕴藏着大量遗传信息,分型技术是研究多态性的主要研究手段。本文建立了一个基于连接酶检测反应的基因多态性并行检测系统,该系统应用连接酶检测反应与基因芯片技术。对AGT M 235T 3种基因型和ACE I/D 3种基因型分型,同直接测序分型结果一致。将该系统应用于168份临床样本,经过统计学分析,用卡方检验发现高血压组和正常组AGT M 235T多态性存在显著差异(2χ=6.191,P<0.05),但ACE I/D多态性没有显著差异(χ2=5.241,P>0.05)。     

太空诱变宫颈癌细胞的差异表达基因初探

将搭载于“神舟四号”飞船飞行返地后的宫颈癌Caski细胞进行单克隆化,筛选出生长速度快于对照组、编号为44F10的细胞克隆,G1期细胞减少,S期细胞增多,成瘤能力增强;编号为48A9的细胞克隆细胞学行为与之相反,与对照组差异均有显著性(P<0.05)。为了解太空诱变肿瘤细胞生物学行为改变的机制,从分子水平入手研究经太空诱变的宫颈癌细胞和地面对照细胞的差异表达基因。应用含2747个人类肿瘤相关基因的Oligo双通道芯片研究差异表达基因。分别抽提44F10、48A9组和地面对照细胞的总RNA,逆转录cDNA并标记探针。将实验组和对照组cDNA探针混合,分别与同一张芯片杂交后,用不同的波长扫描荧光强度,从而筛选出差异基因。44F10组有16个基因呈现差异表达,48A9组有36个基因呈现差异表达。差异性表达主要涉及细胞凋亡、细胞增殖、细胞周期调控和信号转导的基因。促进细胞增殖的基因在44F10组中表达上调,而在48A9组中限制细胞增殖的基因表达上调。研究表明,太空诱变宫颈癌细胞的差异表达基因导致了细胞生物学行为的改变。     

Spectroscopic investigation on the telomeric DNA base sequence repeat

Telomeres are protein-DNA complexes at the terminals of linear chromosomes, which protect chromosomal integrity and maintain cellular replicative capacity. From single-cell organisms to advanced animals and plants, structures and functions of telomeres are both very conservative. In cells of human and vertebral animals, telomeric DNA base sequences all are (TTAGGG)n. In the present work, we have obtained absorption and fluorescence spectra measured from seven synthesized oligonucleotides to simulate the telomeric DNA system and calculated their relative fluorescence quantum yields on which not only telomeric DNA characteristics are predicted but also possibly the shortened telomeric sequences during cell division are implied. Oligonucleotide 5′-TTAGGGTTAGGG holds a low relative fluorescence quantum yield and remarkable excitation energy innerconversion, which tallies with the telomeric sequence of (TTAGGG)n. This result shows that telomeric DNA has a strong non-radiative or innerconvertible capability.